Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: evm.model.Scaffold437.34
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 972
Length: 1620
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Found at i:916 original size:183 final size:183
Alignment explanation
Indices: 608--969 Score: 598
Period size: 183 Copynumber: 2.0 Consensus size: 183
598 ACTCCAAAGA
* * * * *
608 TTCAACTAGAGTTTCGTCGGGAGCCGTTAGGCGAGATGGAAGCACCTAATGACTACGATTGTATT
1 TTCAACTAGACTTTCGTCAGGAGCCATTAGGCGAGATGGAAGCACCTAATGACTACAATTGGATT
* * *
673 CAATATCGAAGTAGCATTAGTGAACAGACTAATGAGATTATAAATTCATATGGGAATGAAGTTAT
66 CAAAATCAAAGTAGCATTAGTGAACAAACTAATGAGATTATAAATTCATATGGGAATGAAGTTAT
*
738 CTCCAACCTGCAGCCATCTAATCTTGTTGCAGATTATGCAATTCCACAAGTAG
131 CTCCAACCTGCAGCCATCTAATCTTGTTGCAAATTATGCAATTCCACAAGTAG
* * * *
791 TTCAACTAGACTTTTGTCAGGAGCCATTAGTCGAGATGGAAGTACCTAATGACTACAATTGGGTT
1 TTCAACTAGACTTTCGTCAGGAGCCATTAGGCGAGATGGAAGCACCTAATGACTACAATTGGATT
*
856 CAAAATCAAAGTAGCATTAGTGAACAAACTAATGAGTTTATAAATTCATATGGGAATGAAGTTAT
66 CAAAATCAAAGTAGCATTAGTGAACAAACTAATGAGATTATAAATTCATATGGGAATGAAGTTAT
921 CTCCAACCTGCAGCCATCTAATCTTGTTGCAAATTATGCAATTCCACAA
131 CTCCAACCTGCAGCCATCTAATCTTGTTGCAAATTATGCAATTCCACAA
970 AATCTGCAGG
Statistics
Matches: 165, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
183 165 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (183 bp):
TTCAACTAGACTTTCGTCAGGAGCCATTAGGCGAGATGGAAGCACCTAATGACTACAATTGGATT
CAAAATCAAAGTAGCATTAGTGAACAAACTAATGAGATTATAAATTCATATGGGAATGAAGTTAT
CTCCAACCTGCAGCCATCTAATCTTGTTGCAAATTATGCAATTCCACAAGTAG
Done.