Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold444.48

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 379

Length: 633
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28


Found at i:157 original size:6 final size:6

Alignment explanation


    Indices: 148--178  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        138 TCATGGCAGC

                                          *     
        148 GGCAAT GGCAAT GGCAAT GGCAAT GGGAAT G
          1 GGCAAT GGCAAT GGCAAT GGCAAT GGCAAT G

        179 AAAACCCAAG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.32, C:0.13, G:0.39, T:0.16


Consensus pattern (6 bp):   
GGCAAT

Found at i:163 original size:18 final size:18

Alignment explanation


    Indices: 140--178  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        130 GATGATGTTC

                  *           
        140 ATGGCAGCGGCAATGGCA
          1 ATGGCAACGGCAATGGCA

                   *        * 
        158 ATGGCAATGGCAATGGGA
          1 ATGGCAACGGCAATGGCA

               
        176 ATG
          1 ATG

        179 AAAACCCAAG


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.31, C:0.15, G:0.38, T:0.15


Consensus pattern (18 bp):   
ATGGCAACGGCAATGGCA

Done.