Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold46.7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2589
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28


Found at i:1615 original size:6 final size:6

Alignment explanation


    Indices: 1564--1620  Score: 51
    Period size: 6  Copynumber: 9.5  Consensus size: 6

       1554 CAATGTTTGG

                       *    *  *      *      *          *  *       
       1564 CAGCAA CAGCCA CAACAG CAGCAG CAGCAG CAGCAA CAACAT CAGCAA
          1 CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA

                      
       1612 CAGCAA CAG
          1 CAGCAA CAG

       1621 TCTCAACAAA


Statistics
Matches: 41,  Mismatches: 10, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
   6   41  1.00

ACGTcount: A:0.44, C:0.35, G:0.19, T:0.02


Consensus pattern (6 bp):   
CAGCAA
Done.