Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold11.668

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 473

Length: 789
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24


Found at i:757 original size:12 final size:12

Alignment explanation


    Indices: 740--773  Score: 52
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        730 GCTTCGTCCG

                        
        740 AGAAGAACAAGA
          1 AGAAGAACAAGA

                         
        752 AGAAGAA-AGAGA
          1 AGAAGAACA-AGA

                      
        764 AGAAGAACAA
          1 AGAAGAACAA

        774 AAAAATGAAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  11    1  0.05
  12   18  0.90
  13    1  0.05

ACGTcount: A:0.68, C:0.06, G:0.26, T:0.00


Consensus pattern (12 bp):   
AGAAGAACAAGA
Done.