Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold47.162

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4971
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27


Found at i:2799 original size:27 final size:27

Alignment explanation


    Indices: 2746--2882  Score: 175
    Period size: 27  Copynumber: 4.9  Consensus size: 27

       2736 GGAACATCTT

                                          
       2746 TTGGAACTTCAGTTTCAACAGCAGCGGCAG
          1 TTGGAACTTCAG---CAACAGCAGCGGCAG

                                       
       2776 TTGGAACTTCAGCAACAGCAGCGGCAG
          1 TTGGAACTTCAGCAACAGCAGCGGCAG

                                       
       2803 TTGGAACTTCAGCAACAGCAGCGGCAG
          1 TTGGAACTTCAGCAACAGCAGCGGCAG

                         **   * * *    
       2830 TTGGAACTTCAGCGGCAGAAACAGCAG
          1 TTGGAACTTCAGCAACAGCAGCGGCAG

                                      
       2857 TTGGAACTTCAGTGGCAACAGCAGCG
          1 TTGGAACTTCA---GCAACAGCAGCG

       2883 CCGTCACCAC


Statistics
Matches: 94,  Mismatches: 10, Indels: 6
        0.85            0.09        0.05

Matches are distributed among these distances:
  27   75  0.80
  30   19  0.20

ACGTcount: A:0.29, C:0.24, G:0.29, T:0.18


Consensus pattern (27 bp):   
TTGGAACTTCAGCAACAGCAGCGGCAG

Done.