Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold470.22

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3033
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24


Found at i:546 original size:21 final size:21

Alignment explanation


    Indices: 520--560  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        510 GGAAAAAGTT

                                 
        520 GAGGAAAAGCCTAAAGAAGAG
          1 GAGGAAAAGCCTAAAGAAGAG

                                
        541 GAGGAAAAGCCTAAAGAAGA
          1 GAGGAAAAGCCTAAAGAAGA

        561 AGCACCCAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.54, C:0.10, G:0.32, T:0.05


Consensus pattern (21 bp):   
GAGGAAAAGCCTAAAGAAGAG
Done.