Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold11.676

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2958
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28


Found at i:1087 original size:22 final size:21

Alignment explanation


    Indices: 1062--1108  Score: 58
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       1052 TAGCGGTCAA

                      *           
       1062 GATGAATAACTTTGATTTGAAT
          1 GATGAAT-ACATTGATTTGAAT

                *             *  
       1084 GATGTATACATTGATTTGGAT
          1 GATGAATACATTGATTTGAAT

                
       1105 GATG
          1 GATG

       1109 GTGCAGATGG


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  21   16  0.73
  22    6  0.27

ACGTcount: A:0.32, C:0.04, G:0.23, T:0.40


Consensus pattern (21 bp):   
GATGAATACATTGATTTGAAT
Done.