Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold48.162

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 207
ACGTcount: A:0.25, C:0.11, G:0.19, T:0.45


Found at i:190 original size:15 final size:15

Alignment explanation


    Indices: 170--202  Score: 50
    Period size: 15  Copynumber: 2.2  Consensus size: 15

        160 TCATATCGTA

                            
        170 TATATAC-GTATAGTT
          1 TATATACAGTATA-TT

                           
        185 TATATACAGTATATT
          1 TATATACAGTATATT

               
        200 TAT
          1 TAT

        203 TTTGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15   12  0.71
  16    5  0.29

ACGTcount: A:0.36, C:0.06, G:0.09, T:0.48


Consensus pattern (15 bp):   
TATATACAGTATATT
Done.