Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold484.125

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 837

Length: 1395
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28


Found at i:1089 original size:6 final size:6

Alignment explanation


    Indices: 1000--1074  Score: 51
    Period size: 6  Copynumber: 12.5  Consensus size: 6

        990 TCACCATAGC

                               *   *       *      *   *    *      *
       1000 CATGAT CATGAT CATGAC CACGAT CATCAT CATCAT GATGAA CATGAC
          1 CATGAT CATGAT CATGAT CATGAT CATGAT CATGAT CATGAT CATGAT

               * *      *    *             
       1048 CATAAA CATGAC CATCAT CATGAT CAT
          1 CATGAT CATGAT CATGAT CATGAT CAT

       1075 CATTCTCATG


Statistics
Matches: 52,  Mismatches: 17, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
   6   52  1.00

ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25


Consensus pattern (6 bp):   
CATGAT
Done.