Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold485.70

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 289

Length: 483
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25


Found at i:426 original size:32 final size:32

Alignment explanation


    Indices: 384--447  Score: 119
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        374 CCTGCAAAGG

                 *                          
        384 CGATATGGAACTACGAGAAGTTCTTGGCGATA
          1 CGATACGGAACTACGAGAAGTTCTTGGCGATA

                                            
        416 CGATACGGAACTACGAGAAGTTCTTGGCGATA
          1 CGATACGGAACTACGAGAAGTTCTTGGCGATA

        448 GCATTGGTTC


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.31, C:0.17, G:0.28, T:0.23


Consensus pattern (32 bp):   
CGATACGGAACTACGAGAAGTTCTTGGCGATA
Done.