Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold485.85

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3081
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:2047 original size:18 final size:18

Alignment explanation


    Indices: 2024--2066  Score: 68
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       2014 GGATTTAACC

                         *    
       2024 CTGACTCCATTCGGAACT
          1 CTGACTCCATTCGAAACT

                              
       2042 CTGACTCCATTCGAAACT
          1 CTGACTCCATTCGAAACT

             *     
       2060 CAGACTC
          1 CTGACTC

       2067 TGTTGGACAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  18   23  1.00

ACGTcount: A:0.26, C:0.35, G:0.14, T:0.26


Consensus pattern (18 bp):   
CTGACTCCATTCGAAACT
Done.