Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold498.23

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 358

Length: 597
ACGTcount: A:0.25, C:0.41, G:0.10, T:0.24


Found at i:326 original size:111 final size:108

Alignment explanation


    Indices: 141--341  Score: 258
    Period size: 111  Copynumber: 1.8  Consensus size: 108

        131 TGCTGCCATA

                                                 **   *                 *    
        141 CAAGCATAAATCCCCACCACCCCTCCCACTGCCTCCCTGTACTTACAAGTCTCCCCCACCGCCAT
          1 CAAGCATAAATCCCCACCACCCCTCCCACTGCCTCCCCATACATACAAGTCTCCCCCACCACCAT

                                                       
        206 TCATATACAAATACAAGTCACCACCCGCACCCCATGATAAATG
         66 TCATATACAAATACAAGTCACCACCCGCACCCCATGATAAATG

                         *    * *       *                            *  *    
        249 CAAGCATAAATCCTCACCTCTCCTCCCATTGCCTCCTCCATACAAATACAAGTCTCCTCCTCCAC
          1 CAAGCATAAATCCCCACCACCCCTCCCACTGCCTCC-CCATAC--ATACAAGTCTCCCCCACCAC

             *     *     *              
        314 CTTTCATCTACAAGTACAAGTCACCACC
         63 CATTCATATACAAATACAAGTCACCACC

        342 ACCGCCTCCG


Statistics
Matches: 77,  Mismatches: 13, Indels: 3
        0.83            0.14        0.03

Matches are distributed among these distances:
 108   32  0.42
 109    4  0.05
 111   41  0.53

ACGTcount: A:0.29, C:0.43, G:0.07, T:0.21


Consensus pattern (108 bp):   
CAAGCATAAATCCCCACCACCCCTCCCACTGCCTCCCCATACATACAAGTCTCCCCCACCACCAT
TCATATACAAATACAAGTCACCACCCGCACCCCATGATAAATG
Done.