Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold498.63

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 367

Length: 612
ACGTcount: A:0.36, C:0.15, G:0.30, T:0.19


Found at i:352 original size:21 final size:21

Alignment explanation


    Indices: 328--370  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        318 GCAAGAGTTT

                                  
        328 GAGA-GACAGAATGAGAGGATG
          1 GAGATGAC-GAATGAGAGGATG

                      *     *    
        349 GAGATGACGACTGAGATGATG
          1 GAGATGACGAATGAGAGGATG

             
        370 G
          1 G

        371 GTGATGCAAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21   16  0.84
  22    3  0.16

ACGTcount: A:0.37, C:0.07, G:0.42, T:0.14


Consensus pattern (21 bp):   
GAGATGACGAATGAGAGGATG
Done.