Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold500.59

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1809
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29


Found at i:579 original size:21 final size:21

Alignment explanation


    Indices: 555--600  Score: 83
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        545 GTAAAAAAGC

                      *          
        555 AGCTGAATGGCAAAAGAGAGA
          1 AGCTGAATGGAAAAAGAGAGA

                                 
        576 AGCTGAATGGAAAAAGAGAGA
          1 AGCTGAATGGAAAAAGAGAGA

                
        597 AGCT
          1 AGCT

        601 CTGTTGCAAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.48, C:0.09, G:0.33, T:0.11


Consensus pattern (21 bp):   
AGCTGAATGGAAAAAGAGAGA
Done.