Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold502.61

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 266

Length: 444
ACGTcount: A:0.32, C:0.25, G:0.27, T:0.16


Found at i:53 original size:15 final size:15

Alignment explanation


    Indices: 12--44  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

          2 TGGCGCCAAA

                           
         12 AGCCGAGAAGAAGCC
          1 AGCCGAGAAGAAGCC

                           
         27 AGCCGAGAAGAAGCC
          1 AGCCGAGAAGAAGCC

               
         42 AGC
          1 AGC

         45 TGAGGAGAAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.39, C:0.27, G:0.33, T:0.00


Consensus pattern (15 bp):   
AGCCGAGAAGAAGCC
Done.