Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold515.20

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 576

Length: 960
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29


Found at i:94 original size:2 final size:2

Alignment explanation


    Indices: 87--127  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

         77 ATTTAAGAAA

                                                                         
         87 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

        128 TGAGTGAAAC


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00


Consensus pattern (2 bp):   
AG

Done.