Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold54.301

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 554

Length: 924
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24


Found at i:724 original size:15 final size:15

Alignment explanation


    Indices: 704--735  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        694 TTCGACAACA

                           
        704 TGGGAGAGTTTTGTC
          1 TGGGAGAGTTTTGTC

                           
        719 TGGGAGAGTTTTGTC
          1 TGGGAGAGTTTTGTC

              
        734 TG
          1 TG

        736 TCAGATGTTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41


Consensus pattern (15 bp):   
TGGGAGAGTTTTGTC
Done.