Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold54.574

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 516

Length: 861
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23


Found at i:530 original size:60 final size:60

Alignment explanation


    Indices: 437--557  Score: 224
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        427 CATCCTTCTC

                                                                        
        437 TGATGTTTGACTTAAACCAGAAGCAGCAAAAAAAATATAATGGAAAGGAGGAAACTACTT
          1 TGATGTTTGACTTAAACCAGAAGCAGCAAAAAAAATATAATGGAAAGGAGGAAACTACTT

                                                        *           *   
        497 TGATGTTTGACTTAAACCAGAAGCAGCAAAAAAAATATAATGGAGAGGAGGAAACTGCTT
          1 TGATGTTTGACTTAAACCAGAAGCAGCAAAAAAAATATAATGGAAAGGAGGAAACTACTT

             
        557 T
          1 T

        558 ACGAAGTGCT


Statistics
Matches: 59,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  60   59  1.00

ACGTcount: A:0.45, C:0.12, G:0.21, T:0.22


Consensus pattern (60 bp):   
TGATGTTTGACTTAAACCAGAAGCAGCAAAAAAAATATAATGGAAAGGAGGAAACTACTT
Done.