Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold57.90

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1152
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25


Found at i:808 original size:12 final size:12

Alignment explanation


    Indices: 791--817  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        781 TCACCATCAT

                        
        791 CTTCTTCTTCTA
          1 CTTCTTCTTCTA

                        
        803 CTTCTTCTTCTA
          1 CTTCTTCTTCTA

               
        815 CTT
          1 CTT

        818 GTTCCACTGC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.07, C:0.33, G:0.00, T:0.59


Consensus pattern (12 bp):   
CTTCTTCTTCTA
Done.