Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold57.159

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 243
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22


Found at i:72 original size:6 final size:6

Alignment explanation


    Indices: 58--88  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

         48 GGAAGACATG

                *                               
         58 GGTGGT GGTGCT GGTGCT GGTGCT GGTGCT G
          1 GGTGCT GGTGCT GGTGCT GGTGCT GGTGCT G

         89 TTGCAGTCCA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.00, C:0.13, G:0.55, T:0.32


Consensus pattern (6 bp):   
GGTGCT

Done.