Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold57.419

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1338
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25


Found at i:64 original size:21 final size:20

Alignment explanation


    Indices: 25--64  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 20

         15 CTTGCTTAAG

                          *     
         25 TATTGGAGAGGGGGTGGTAC
          1 TATTGGAGAGGGGGCGGTAC

                        *       
         45 TATTGGTAGAGGTGGCGGTA
          1 TATTGG-AGAGGGGGCGGTA

         65 ATGCTTGTGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20    6  0.35
  21   11  0.65

ACGTcount: A:0.20, C:0.05, G:0.47, T:0.28


Consensus pattern (20 bp):   
TATTGGAGAGGGGGCGGTAC
Done.