Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold59.55

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 286

Length: 477
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.21


Found at i:164 original size:6 final size:6

Alignment explanation


    Indices: 155--189  Score: 61
    Period size: 6  Copynumber: 5.8  Consensus size: 6

        145 CCACTGCAGC

                       *                            
        155 CACAGG CACAAG CACAGG CACAGG CACAGG CACAG
          1 CACAGG CACAGG CACAGG CACAGG CACAGG CACAG

        190 CCTGCCATCA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.37, C:0.34, G:0.29, T:0.00


Consensus pattern (6 bp):   
CACAGG

Done.