Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold60.4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 259

Length: 432
ACGTcount: A:0.29, C:0.13, G:0.35, T:0.23


Found at i:342 original size:21 final size:22

Alignment explanation


    Indices: 318--358  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

        308 TTTCCGAGAT

                   *              
        318 GAAAAGGCGAA-GGAAAGAAGA
          1 GAAAAGGAGAAGGGAAAGAAGA

                 *              
        339 GAAAATGAGAAGGGAAAGAA
          1 GAAAAGGAGAAGGGAAAGAA

        359 CACTGGGTAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21    9  0.53
  22    8  0.47

ACGTcount: A:0.59, C:0.02, G:0.37, T:0.02


Consensus pattern (22 bp):   
GAAAAGGAGAAGGGAAAGAAGA
Done.