Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold60.382

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 594

Length: 990
ACGTcount: A:0.29, C:0.17, G:0.33, T:0.21


Found at i:952 original size:18 final size:18

Alignment explanation


    Indices: 910--952  Score: 52
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        900 AAAGAGAAGT

                             *
        910 GATGATGATGCAGAGGAG
          1 GATGATGATGCAGAGGAA

              *                
        928 GAGGATGATG-ATGAGGAA
          1 GATGATGATGCA-GAGGAA

                   
        946 GATGATG
          1 GATGATG

        953 TTGTTGAGTT


Statistics
Matches: 21,  Mismatches: 3, Indels: 2
        0.81            0.12        0.08

Matches are distributed among these distances:
  17    1  0.05
  18   20  0.95

ACGTcount: A:0.35, C:0.02, G:0.44, T:0.19


Consensus pattern (18 bp):   
GATGATGATGCAGAGGAA
Done.