Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold60.467

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 349

Length: 582
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15


Found at i:112 original size:24 final size:24

Alignment explanation


    Indices: 85--137  Score: 63
    Period size: 24  Copynumber: 2.2  Consensus size: 24

         75 GAAGCCAGTC

                          *          
         85 AAGGAAAAGAAACCCAAAGCT-CCA
          1 AAGGAAAAGAAACCAAAAG-TGCCA

                 *     *            
        109 AAGGAGAAGAAGCCAAAAGTGCCA
          1 AAGGAAAAGAAACCAAAAGTGCCA

                 
        133 AAGGA
          1 AAGGA

        138 GAAAAAGCCT


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  23    1  0.04
  24   24  0.96

ACGTcount: A:0.53, C:0.19, G:0.25, T:0.04


Consensus pattern (24 bp):   
AAGGAAAAGAAACCAAAAGTGCCA
Done.