Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold63.41

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 946

Length: 1578
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29


Found at i:1503 original size:3 final size:3

Alignment explanation


    Indices: 1495--1547  Score: 97
    Period size: 3  Copynumber: 17.7  Consensus size: 3

       1485 TGTTGGGGAA

                                                                          *
       1495 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAC
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT

                  
       1543 GAT GA
          1 GAT GA

       1548 GAAGATTAAG


Statistics
Matches: 48,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   48  1.00

ACGTcount: A:0.34, C:0.02, G:0.34, T:0.30


Consensus pattern (3 bp):   
GAT

Done.