Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold63.255

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1749
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.22


Found at i:737 original size:24 final size:25

Alignment explanation


    Indices: 699--769  Score: 78
    Period size: 24  Copynumber: 2.8  Consensus size: 25

        689 ATATGAGTGT

                                       
        699 GAAAAGGAAGGAGGAGATGGAGAAGAG
          1 GAAAAGGAA-GAGGAGA-GGAGAAGAG

                                     
        726 G-AAA-GAAGAGGAGAGG-G-AGAG
          1 GAAAAGGAAGAGGAGAGGAGAAGAG

                                   
        747 GAAAAGGAAGATGGAGAAGGAGA
          1 GAAAAGGAAGA-GGAG-AGGAGA

        770 GGGTGGAGCG


Statistics
Matches: 38,  Mismatches: 0, Indels: 12
        0.76            0.00        0.24

Matches are distributed among these distances:
  21    5  0.13
  22    4  0.11
  23    7  0.18
  24   11  0.29
  25    6  0.16
  26    4  0.11
  27    1  0.03

ACGTcount: A:0.49, C:0.00, G:0.48, T:0.03


Consensus pattern (25 bp):   
GAAAAGGAAGAGGAGAGGAGAAGAG

Done.