Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold63.307

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2142
ACGTcount: A:0.27, C:0.14, G:0.34, T:0.25


Found at i:722 original size:12 final size:12

Alignment explanation


    Indices: 707--740  Score: 59
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        697 GTTGGTGCAA

                *       
        707 GTGGGGGTGGAG
          1 GTGGTGGTGGAG

                        
        719 GTGGTGGTGGAG
          1 GTGGTGGTGGAG

                      
        731 GTGGTGGTGG
          1 GTGGTGGTGG

        741 TGGGACAGTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.06, C:0.00, G:0.71, T:0.24


Consensus pattern (12 bp):   
GTGGTGGTGGAG
Done.