Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold64.134

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 572

Length: 954
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23


Found at i:653 original size:12 final size:12

Alignment explanation


    Indices: 613--644  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        603 GGAGGAGGAG

                        
        613 GAGGAAGAAGAA
          1 GAGGAAGAAGAA

              *         
        625 GATGAAGAAGAA
          1 GAGGAAGAAGAA

                    
        637 GAGGAAGA
          1 GAGGAAGA

        645 CGATGAGGAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.56, C:0.00, G:0.41, T:0.03


Consensus pattern (12 bp):   
GAGGAAGAAGAA
Done.