Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold648.33

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2004
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:1231 original size:21 final size:22

Alignment explanation


    Indices: 1207--1249  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       1197 GGAGTGGATG

                   *              
       1207 TTAGAAGCTGG-GGCCCTTGTT
          1 TTAGAAGATGGAGGCCCTTGTT

                *           *     
       1228 TTAGCAGATGGAGGCCTTTGTT
          1 TTAGAAGATGGAGGCCCTTGTT

       1250 GTATTGATGA


Statistics
Matches: 18,  Mismatches: 3, Indels: 1
        0.82            0.14        0.05

Matches are distributed among these distances:
  21    9  0.50
  22    9  0.50

ACGTcount: A:0.16, C:0.16, G:0.33, T:0.35


Consensus pattern (22 bp):   
TTAGAAGATGGAGGCCCTTGTT
Done.