Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold65.214

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 952

Length: 1587
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29


Found at i:624 original size:18 final size:18

Alignment explanation


    Indices: 601--636  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        591 CATTTCTAGC

                              
        601 AGTGGTACTGGCTTTGGA
          1 AGTGGTACTGGCTTTGGA

                  *    *      
        619 AGTGGTTCTGGGTTTGGA
          1 AGTGGTACTGGCTTTGGA

        637 TTAACGACTG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.14, C:0.08, G:0.42, T:0.36


Consensus pattern (18 bp):   
AGTGGTACTGGCTTTGGA
Done.