Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold66.103

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.20, C:0.09, G:0.44, T:0.27


Found at i:562 original size:18 final size:18

Alignment explanation


    Indices: 541--581  Score: 66
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        531 AATTGGGACT

                               
        541 GGTGGAG-GAGGTGGTGGA
          1 GGTGGAGAG-GGTGGTGGA

                              
        559 GGTGGAGAGGGTGGTGGA
          1 GGTGGAGAGGGTGGTGGA

                 
        577 GGTGG
          1 GGTGG

        582 CAATGGTTAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  18   21  0.95
  19    1  0.05

ACGTcount: A:0.15, C:0.00, G:0.68, T:0.17


Consensus pattern (18 bp):   
GGTGGAGAGGGTGGTGGA
Done.