Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold66.329

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 459

Length: 765
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:541 original size:6 final size:6

Alignment explanation


    Indices: 530--560  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        520 GAACTAGAAG

                                                
        530 CTGTTC CTGTTC CTGTTC CTGTTC CTGTTC C
          1 CTGTTC CTGTTC CTGTTC CTGTTC CTGTTC C

        561 GTTTCCATCT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.00, C:0.35, G:0.16, T:0.48


Consensus pattern (6 bp):   
CTGTTC

Done.