Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold693.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 437

Length: 729
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28


Found at i:351 original size:12 final size:12

Alignment explanation


    Indices: 334--368  Score: 52
    Period size: 12  Copynumber: 2.9  Consensus size: 12

        324 GCCCCCTTTT

                   *    
        334 CTTAACCTTAAC
          1 CTTAACCCTAAC

                        
        346 CTTAACCCTAAC
          1 CTTAACCCTAAC

             *         
        358 CCTAACCCTAA
          1 CTTAACCCTAA

        369 TTTCTCTTCT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.34, C:0.40, G:0.00, T:0.26


Consensus pattern (12 bp):   
CTTAACCCTAAC
Done.