Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold71.27

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5049
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30


Found at i:649 original size:3 final size:3

Alignment explanation


    Indices: 641--665  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        631 ACTTTGGCTT

                                             
        641 ATG ATG ATG ATG ATG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG A

        666 ATGTGGAGAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32


Consensus pattern (3 bp):   
ATG

Done.