Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold71.324

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27


Found at i:119 original size:6 final size:6

Alignment explanation


    Indices: 110--144  Score: 61
    Period size: 6  Copynumber: 5.8  Consensus size: 6

        100 TCTTCCTCTT

                                          *         
        110 CTTCCC CTTCCC CTTCCC CTTCCC CTCCCC CTTCC
          1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTCC

        145 TACTCTTCTC


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31


Consensus pattern (6 bp):   
CTTCCC

Found at i:214 original size:15 final size:15

Alignment explanation


    Indices: 174--214  Score: 64
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        164 CTCCTTCTCT

                      *    
        174 TTCTACTTCTCTTCC
          1 TTCTACTTCTTTTCC

            *              
        189 GTCTACTTCTTTTCC
          1 TTCTACTTCTTTTCC

                       
        204 TTCTACTTCTT
          1 TTCTACTTCTT

        215 ACCTCTCTTT


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.07, C:0.34, G:0.02, T:0.56


Consensus pattern (15 bp):   
TTCTACTTCTTTTCC
Done.