Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold71.435

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1242
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21


Found at i:479 original size:12 final size:12

Alignment explanation


    Indices: 464--493  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        454 CGAAAAGCTC

                 *      
        464 CTAGAGCTAGAG
          1 CTAGAACTAGAG

                        
        476 CTAGAACTAGAG
          1 CTAGAACTAGAG

                  
        488 CTAGAA
          1 CTAGAA

        494 ATTTAAGAAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.40, C:0.17, G:0.27, T:0.17


Consensus pattern (12 bp):   
CTAGAACTAGAG
Done.