Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold72.256

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 392

Length: 654
ACGTcount: A:0.32, C:0.25, G:0.27, T:0.16


Found at i:241 original size:30 final size:30

Alignment explanation


    Indices: 205--277  Score: 85
    Period size: 30  Copynumber: 2.4  Consensus size: 30

        195 TGAGTATCAG

                                  *     *  
        205 CAGCAGCAGCTGCA-CCGTCAAGACCAGGAA
          1 CAGCAGCAGCTGCAGCC-TCAACACCAGCAA

                     *                    
        235 CAGCAGCAGTTGCAGCCTCAACACCAGCAA
          1 CAGCAGCAGCTGCAGCCTCAACACCAGCAA

             *   *       
        265 CTGCAACAGCTGC
          1 CAGCAGCAGCTGC

        278 TGCATCATCA


Statistics
Matches: 36,  Mismatches: 6, Indels: 2
        0.82            0.14        0.05

Matches are distributed among these distances:
  30   34  0.94
  31    2  0.06

ACGTcount: A:0.32, C:0.36, G:0.23, T:0.10


Consensus pattern (30 bp):   
CAGCAGCAGCTGCAGCCTCAACACCAGCAA
Done.