Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold72.443

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2472
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23


Found at i:162 original size:21 final size:21

Alignment explanation


    Indices: 65--156  Score: 139
    Period size: 21  Copynumber: 4.4  Consensus size: 21

         55 GCATTGGCCA

                   *             
         65 AAAATGAAAAGGCAGTGAACC
          1 AAAATGAGAAGGCAGTGAACC

               *                 
         86 AAAGTGAGAAGGCAGTGAACC
          1 AAAATGAGAAGGCAGTGAACC

               *                 
        107 AAAGTGAGAAGGCAGTGAACC
          1 AAAATGAGAAGGCAGTGAACC

                   *  *          
        128 AAAATGAAAAAGCAGTGAACC
          1 AAAATGAGAAGGCAGTGAACC

                    
        149 AAAATGAG
          1 AAAATGAG

        157 GAAGCATTTT


Statistics
Matches: 65,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   65  1.00

ACGTcount: A:0.50, C:0.13, G:0.27, T:0.10


Consensus pattern (21 bp):   
AAAATGAGAAGGCAGTGAACC
Done.