Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold759.5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 212

Length: 354
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25


Found at i:169 original size:3 final size:3

Alignment explanation


    Indices: 163--198  Score: 72
    Period size: 3  Copynumber: 12.0  Consensus size: 3

        153 GATAACTATG

                                                           
        163 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA

        199 AATGGTGATT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00


Consensus pattern (3 bp):   
GAA

Done.