Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold78.93

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2709
ACGTcount: A:0.37, C:0.14, G:0.29, T:0.20


Found at i:496 original size:18 final size:18

Alignment explanation


    Indices: 469--517  Score: 80
    Period size: 18  Copynumber: 2.7  Consensus size: 18

        459 AGATAGGGAC

                              
        469 AGAGAAAAGGAGAAGGAA
          1 AGAGAAAAGGAGAAGGAA

                 *    *       
        487 AGAGACAAGGTGAAGGAA
          1 AGAGAAAAGGAGAAGGAA

                         
        505 AGAGAAAAGGAGA
          1 AGAGAAAAGGAGA

        518 GAGAGAAACT


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  18   27  1.00

ACGTcount: A:0.57, C:0.02, G:0.39, T:0.02


Consensus pattern (18 bp):   
AGAGAAAAGGAGAAGGAA
Done.