Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold1.493

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1377
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33


Found at i:190 original size:12 final size:11

Alignment explanation


    Indices: 168--201  Score: 50
    Period size: 12  Copynumber: 3.0  Consensus size: 11

        158 TCTGCCGGTT

                       
        168 ATACTATACTA
          1 ATACTATACTA

                        
        179 ATACTAATACTA
          1 ATACT-ATACTA

                 *     
        191 ATACTTTACTA
          1 ATACTATACTA

        202 GTCTCTCTCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  11   10  0.48
  12   11  0.52

ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38


Consensus pattern (11 bp):   
ATACTATACTA
Done.