Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold8.339

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 303
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35


Found at i:240 original size:37 final size:37

Alignment explanation


    Indices: 190--266  Score: 154
    Period size: 37  Copynumber: 2.1  Consensus size: 37

        180 GATACTAAGA

                                                 
        190 TTCAACTGCTTGATCTTCCTGGAATTATTGAAGGTGC
          1 TTCAACTGCTTGATCTTCCTGGAATTATTGAAGGTGC

                                                 
        227 TTCAACTGCTTGATCTTCCTGGAATTATTGAAGGTGC
          1 TTCAACTGCTTGATCTTCCTGGAATTATTGAAGGTGC

               
        264 TTC
          1 TTC

        267 TGAAGGCAAG


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   40  1.00

ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39


Consensus pattern (37 bp):   
TTCAACTGCTTGATCTTCCTGGAATTATTGAAGGTGC
Done.