Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold8.614

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2325
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26


Found at i:1380 original size:132 final size:132

Alignment explanation


    Indices: 1143--1401  Score: 455
    Period size: 132  Copynumber: 2.0  Consensus size: 132

       1133 AATCGGATAC

                     *                                  *   **               
       1143 TGAAGTTCATTCCCCTAGGCTCCCTGAGATTGGGAAAAAGCTGATATGTGCATCAAATCAGTTTA
          1 TGAAGTTCAATCCCCTAGGCTCCCTGAGATTGGGAAAAAGCTGACATGCACATCAAATCAGTTTA

                                                                             
       1208 CCAGCTCAAATGACCAGCAGATAGTGAATAGGTCACCTCCCAAAAGGCTTCCAGGTGGTGCTTGC
         66 CCAGCTCAAATGACCAGCAGATAGTGAATAGGTCACCTCCCAAAAGGCTTCCAGGTGGTGCTTGC

              
       1273 AT
        131 AT

                                                              *              
       1275 TGAAGTTCAATCCCCTAGGCTCCCTGAGATTGGGAAAAAGCTGACATGCATATCAAATCAGTTTA
          1 TGAAGTTCAATCCCCTAGGCTCCCTGAGATTGGGAAAAAGCTGACATGCACATCAAATCAGTTTA

                    *                      *                              
       1340 CCAGCTCAGATGACCAGCAGATAGTGAATAGTTCACCTCCCAAAAGGCTTCCAGGTGGTGCT
         66 CCAGCTCAAATGACCAGCAGATAGTGAATAGGTCACCTCCCAAAAGGCTTCCAGGTGGTGCT

       1402 CGAATTTCTC


Statistics
Matches: 120,  Mismatches: 7, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 132  120  1.00

ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24


Consensus pattern (132 bp):   
TGAAGTTCAATCCCCTAGGCTCCCTGAGATTGGGAAAAAGCTGACATGCACATCAAATCAGTTTA
CCAGCTCAAATGACCAGCAGATAGTGAATAGGTCACCTCCCAAAAGGCTTCCAGGTGGTGCTTGC
AT

Found at i:1583 original size:42 final size:42

Alignment explanation


    Indices: 1524--1606  Score: 166
    Period size: 42  Copynumber: 2.0  Consensus size: 42

       1514 CCAGAAGCAA

                                                      
       1524 TAACAACTCGCAGGAATTAGTACCTTATCAAAGCAGCAGACC
          1 TAACAACTCGCAGGAATTAGTACCTTATCAAAGCAGCAGACC

                                                     
       1566 TAACAACTCGCAGGAATTAGTACCTTATCAAAGCAGCAGAC
          1 TAACAACTCGCAGGAATTAGTACCTTATCAAAGCAGCAGAC

       1607 AAGGGTCGGG


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   41  1.00

ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19


Consensus pattern (42 bp):   
TAACAACTCGCAGGAATTAGTACCTTATCAAAGCAGCAGACC
Done.