Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold8.686

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 352

Length: 588
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20


Found at i:568 original size:21 final size:21

Alignment explanation


    Indices: 542--581  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        532 AGGTACAACC

                      *          
        542 AGAACCAAGAGGAGTTCGAAG
          1 AGAACCAAGACGAGTTCGAAG

                               
        563 AGAACCAAGACGAGTTCGA
          1 AGAACCAAGACGAGTTCGA

        582 GCCATGA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.42, C:0.17, G:0.30, T:0.10


Consensus pattern (21 bp):   
AGAACCAAGACGAGTTCGAAG
Done.