Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold8.927

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 403

Length: 672
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24


Found at i:552 original size:6 final size:6

Alignment explanation


    Indices: 541--579  Score: 78
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        531 AACAGTGCCT

                                                         
        541 CCACAA CCACAA CCACAA CCACAA CCACAA CCACAA CCA
          1 CCACAA CCACAA CCACAA CCACAA CCACAA CCACAA CCA

        580 AGCAATTTCT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00


Consensus pattern (6 bp):   
CCACAA

Done.