Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold82.101

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1686
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19


Found at i:387 original size:21 final size:21

Alignment explanation


    Indices: 361--402  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        351 AAGCAGAAGG

                                 
        361 GAAGAACAAGAACAAGAGCAA
          1 GAAGAACAAGAACAAGAGCAA

                  * *   *        
        382 GAAGAAGAGGAAGAAGAGCAA
          1 GAAGAACAAGAACAAGAGCAA

        403 CAAAGAAACA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.60, C:0.10, G:0.31, T:0.00


Consensus pattern (21 bp):   
GAAGAACAAGAACAAGAGCAA
Done.