Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold82.104

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1752
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27


Found at i:787 original size:18 final size:18

Alignment explanation


    Indices: 762--819  Score: 89
    Period size: 18  Copynumber: 3.2  Consensus size: 18

        752 GATGGGGTAA

                              
        762 CAGGCCTAGTGATTACTC
          1 CAGGCCTAGTGATTACTC

             *       *        
        780 CCGGCCTAGCGATTACTC
          1 CAGGCCTAGTGATTACTC

               *              
        798 CAGACCTAGTGATTACTC
          1 CAGGCCTAGTGATTACTC

                
        816 CAGG
          1 CAGG

        820 TGGGGTTCAT


Statistics
Matches: 34,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  18   34  1.00

ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24


Consensus pattern (18 bp):   
CAGGCCTAGTGATTACTC
Done.