Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold868.7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 257

Length: 429
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.21


Found at i:39 original size:15 final size:16

Alignment explanation


    Indices: 19--55  Score: 51
    Period size: 15  Copynumber: 2.4  Consensus size: 16

          9 GCCAAAGGTG

                      *     
         19 GAAGAAGA-ATTAGAA
          1 GAAGAAGACAATAGAA

                            
         34 GAAGAAGACAATAGAA
          1 GAAGAAGACAATAGAA

                   
         50 G-AGAAG
          1 GAAGAAG

         56 CAGCAATTGC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  15   13  0.65
  16    7  0.35

ACGTcount: A:0.59, C:0.03, G:0.30, T:0.08


Consensus pattern (16 bp):   
GAAGAAGACAATAGAA
Done.