Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold88.168

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 282
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32


Found at i:165 original size:96 final size:96

Alignment explanation


    Indices: 1--182  Score: 364
    Period size: 96  Copynumber: 1.9  Consensus size: 96

                                                                             
          1 ATGATCTTCATGAATTCAAGAACCACTAGTGCATCCACTGTTTCCTGCAAATCGGGAAACAAGAA
          1 ATGATCTTCATGAATTCAAGAACCACTAGTGCATCCACTGTTTCCTGCAAATCGGGAAACAAGAA

                                           
         66 CAGCTTCTTCTTCTGGATATTATTTAATTGC
         66 CAGCTTCTTCTTCTGGATATTATTTAATTGC

                                                                             
         97 ATGATCTTCATGAATTCAAGAACCACTAGTGCATCCACTGTTTCCTGCAAATCGGGAAACAAGAA
          1 ATGATCTTCATGAATTCAAGAACCACTAGTGCATCCACTGTTTCCTGCAAATCGGGAAACAAGAA

                                 
        162 CAGCTTCTTCTTCTGGATATT
         66 CAGCTTCTTCTTCTGGATATT

        183 GTTCTGCTTA


Statistics
Matches: 86,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  96   86  1.00

ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31


Consensus pattern (96 bp):   
ATGATCTTCATGAATTCAAGAACCACTAGTGCATCCACTGTTTCCTGCAAATCGGGAAACAAGAA
CAGCTTCTTCTTCTGGATATTATTTAATTGC
Done.